Publications

  1. Sharma, K., Gillum, N., Boyd, J.L., and Schmid, A.K. 2012. The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon. BMC Genomics, 13:351.
  2. Schmid A.K., Pan M., Sharma K., and Baliga N.S., 2011. Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. Nucleic Acids Res., 39(7): 2519-33. Supplemental data.
  3. Koide , T., Reiss, D.J., Bare, C.J., Facciotti , M., Schmid , A.K., Pan, M., Marzolf, B., Van , P., Lo , F-Y., Pratap, A., Deutsch , E., Peterson , A., Martin, D., Pang, W.L., Baliga, N.S. 2009. Prevalence of transcription promoters within archaeal operons and coding sequences. Nature Mol Sys Biol., 5:285.
  4. Schmid, A.K. Reiss, D.J., Pan, M., Koide, T., and Baliga, N.S. 2009. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Nature Mol Sys Biol., 5:282.
  5. Van, P.T., Schmid, A.K., King, N., Kaur, A., Pan, M., Whitehead, K., Koide, T., Facciotti, M., Reiss, D.J., and Baliga, N.S. 2007. The Halobacterium salinarum NRC-1 peptide atlas: toward strategies for targeted proteomics and improved proteome coverage. J Proteome Res. 7(9):3755-64.
  6. Schmid, A.K., Reiss, D.J., Kaur, A., Pan, M., King, N., Van, P., Hohmann, L., Martin, D.B., and Baliga, N.S. 2007. Anatomy of microbial cell state transitions in response to oxygen. Genome Research. 17(10):1399-413.
  7. Bonneau, R., Facciotti, M.T., Reiss, D.J., Schmid, A.K., Pan, M., Kaur, A., Thorsson, V., Shannon, P., Johnson, M., Bare, C.J., Longabaugh, W., Vuthoori, M., Whitehead, K., DiRuggiero, J., Johnson, C., Hood L., and Baliga, N.S. 2007. A predictive model for transcriptional control of physiology in a free-living cell. Cell. 131(7):1354-65 (cover article).
  8. Bare, C.J., Shannon, P.T., Schmid, A.K., Baliga, N.S. 2007. The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. BMC Bioinformatics. 8:456.
  9. Rothfuss, H.M., Lara, J.C., Schmid, A.K., and Lidstrom, M.E. 2006. Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1. Microbiology. 152(9): 2779-2787.
  10. Schmid, A.K. and Baliga, N.S. 2006. Prokaryotic Systems Biology, p395-423. In M. Al-Rubeai and M. Fussenegger (ed.), Cell Engineering Vol. 5: Systems Biology. Springer Press, New York, NY.
  11. Schmid, A.K., Howell, H.H., Battista, J.R., Peterson, S.N., and Lidstrom, M.E. 2005. HspR is a global negative regulator of heat shock gene expression in Deinococcus radiodurans. Mol Microbiol. 55(5):1579-1590.
  12. Schmid, A.K., Howell, H.H., Battista, J.R., Peterson, S.N., and Lidstrom, M.E. 2005. Global transcriptional and proteomic analysis of the Sig1 heat shock regulon of Deinococcus radiodurans. J Bacteriol. 187(10):3339-3351.
  13. Schmid, A.K., Lipton, M.S., Mottaz, H., Monroe, M.E., Smith, R.D., and Lidstrom, M.E. 2005. Global whole-cell FTICR mass spectrometric proteomics analysis of the heat shock response in the radioresistant bacterium Deinococcus radiodurans. J. Proteome Res. 4(3):709-718.
  14. Schmid, A.K. and Lidstrom, M.E., 2002. Involvement of two putative alternative sigma factors in stress response of the radioresistant bacterium Deinococcus radiodurans. J. Bacteriol. 184(22):6182-6189.