Allen G Rodrigo

Adjunct Professor of Biology

Office: 
137
Campus Box: 
90338
Phone: 
(919) 684-1698

Lab Site: http://biology.duke.edu/rodrigolab

Research Interests: 

My research focuses on evolutionary bioinformatics and computatioanl biology. In particular, I am interested in the development of novel methods to study the evolution of genes, genomes, organisms and species.

My research focuses on evolutionary bioinformatics and computatioanl biology. In particular, I am interested in the development of novel methods to study the evolution of genes, genomes, organisms and species.

Education

  • Ph.D. 1990, University of Canterbury (New Zealand)

Papers Published

Linking Evolution, Ecology, and Health: TriCEM, 8, 2015
Nunn, CL; Alberts, SC; McClain, CR; Meshnick, SR; Vision, TJ; Wiegmann, BM; Rodrigo, AG, BioScience (BioOne). 65 vol. (8); pp. 748-749

Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals., 11, 2015
Wu, SH; Rodrigo, AG, BMC Bioinformatics. 16 pp. 357

Patterns of gut bacterial colonization in three primate species., 1, 2015
McKenney, EA; Rodrigo, A; Yoder, AD, PloS one. 10 vol. (5); pp. e0124618

Transient compartmentalization of simian immunodeficiency virus variants in the breast milk of african green monkeys., 10, 2013
Ho, C; Wu, S; Amos, JD; Colvin, L; Smith, SD; Wilks, AB; Demarco, CT; Brinkley, C; Denny, TN; Schmitz, JE; Rodrigo, AG; Permar, SR, J Virol. 87 vol. (20); pp. 11292-11299

Coalescent entanglement and the conditional dependence of the times to common ancestry of mutually exclusive pairs of individuals., 1, 2013
Wu, S; Koelle, K; Rodrigo, A, Journal of Heredity. 104 vol. (1); pp. 86-91

Science incubators: synthesis centers and their role in the research ecosystem., 1, 2013
Rodrigo, A; Alberts, S; Cranston, K; Kingsolver, J; Lapp, H; McClain, C; Smith, R; Vision, T; Weintraub, J; Wiegmann, B, PLoS Biol. 11 vol. (1); pp. e1001468

Reduced total genetic diversity following translocations? A metapopulation approach, 0, 2013
Thrimawithana, AH; Ortiz-Catedral, L; Rodrigo, A; Hauber, ME, Conservation Genetics. 14 vol. (5); pp. 1043-1055

HIV-1 transmission during early antiretroviral therapy: evaluation of two HIV-1 transmission events in the HPTN 052 prevention study., 0, 2013
Ping, L-H; Jabara, CB; Rodrigo, AG; Hudelson, SE; Piwowar-Manning, E; Wang, L; Eshleman, SH; Cohen, MS; Swanstrom, R, PLoS One. 8 vol. (9); pp. e71557

A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels., 6, 2012
Wu, SH; Black, MA; North, RA; Rodrigo, AG, BMC Bioinformatics. 13 pp. 137

Coalescent entanglement and the conditional dependence of the times to common ancestry of mutually exclusive pairs of individuals., 10, 2012
S Wu, K Koelle, A Rodrigo, J Hered. 104 vol. (1); pp. 86-91

Assessing the complex sponge microbiota: Core, variable and species-specific bacterial communities in marine sponges, 0, 2012
Schmitt, S; Tsai, P; Bell, J; Fromont, J; Ilan, M; Lindquist, N; Perez, T; Rodrigo, A; Schupp, PJ; Vacelet, J; Webster, N; Hentschel, U; Taylor, MW, ISME J. 6 vol. (3); pp. 564-576

Viral Quasispecies Evolution in Chronic Hepatitis B Patients Treated with Lamivudine., 0, 2012
Cheng, Y; Guindon, S; Hu, PZ; Rodrigo, A; Lim, SG, Journal of Hepatology.

Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma Gallisepticum, 0, 2012
Delaney, NF; Balenger, S; Bonneaud, C; Marx, CJ; Hill, GE; Ferguson-Noel, N; Tsai, P; Rodrigo, A; Edwards, SV, PLoS genetics. 8 vol. (2); pp. e1002511

Increased viral quasispecies evolution in HBeAg seroconverter patients treated with oral nucleoside therapy, 0, 2012
Cheng, Y; Guindon, S; Rodrigo, A; Lim, SG, J Hepatol. 58 vol. (2); pp. 217-224

Cumulative viral evolutionary changes in chronic hepatitis B virus infection precedes hepatitis B e antigen seroconversion, 0, 2012
Cheng, Y; Guindon, S; Rodrigo, A; Wee, LY; Inoue, M; Thompson, AJV; Locarnini, S; Lim, SG, Gut. 62 vol. (9); pp. 1347-1355

Evidence for reduced selection pressure on the hepatitis B virus core gene in hepatitis B e antigen-negative chronic hepatitis B., 8, 2011
Warner, BG; Tsai, P; Rodrigo, AG; 'ofanoa, M; Gane, EJ; Munn, SR; Abbott, WGH, J Gen Virol. 92 vol. (Pt 8); pp. 1800-1808

Time-dependent rates of molecular evolution., 8, 2011
Ho, SYW; Lanfear, R; Bromham, L; Phillips, MJ; Soubrier, J; Rodrigo, AG; Cooper, A, Mol Ecol. 20 vol. (15); pp. 3087-3101

The distribution of feline immunodeficiency virus in tissue compartments of feral domestic cats., 3, 2010
Hayward, JJ; Rodrigo, AG, Archives of Virology. 155 vol. (3); pp. 411-416

Molecular epidemiology of feline immunodeficiency virus in the domestic cat (Felis catus)., 3, 2010
Hayward, JJ; Rodrigo, AG, Vet Immunol Immunopathol. 134 vol. (1-2); pp. 68-74

Associations between HLA class I alleles and escape mutations in the hepatitis B virus core gene in New Zealand-resident Tongans., 1, 2010
Abbott, WGH; Tsai, P; Leung, E; Trevarton, A; Ofanoa, M; Hornell, J; Gane, EJ; Munn, SR; Rodrigo, AG, Journal of virology. 84 vol. (1); pp. 621-629

Ecstatic display calls of the Adélie penguin honestly predict male condition and breeding success, 0, 2010
Marks, EJ; Rodrigo, AG; Brunton, DH, Behaviour. 147 vol. (2); pp. 165-184

Using logistic regression models to predict breeding success in male Adélie penguins (Pygoscelis adeliae), 0, 2010
Marks, EJ; Rodrigo, AG; Brunton, DH, Polar Biology. 33 vol. (8); pp. 1083-1094

A statistical model to identify differentially expressed proteins in 2D PAGE gels., 9, 2009
Wu, SH; Black, MA; North, RA; Atkinson, KR; Rodrigo, AG, PLoS Comput Biol. 5 vol. (9); pp. e1000509

On the use of bootstrapped topologies in coalescent-based Bayesian MCMC inference: a comparison of estimation and computational efficiencies., 7, 2009
Rodrigo, AG; Tsai, P; Shearman, H, Evolutionary bioinformatics online. 5 pp. 97-105

Covariation of branch lengths in phylogenies of functionally related genes., 12, 2009
Li, WLS; Rodrigo, AG, PloS one. 4 vol. (12); pp. e8487

DNA barcoding of the endemic New Zealand leafroller moth genera, Ctenopseustis and Planotortrix: DNA BARCODING, 0, 2009
Langhoff, P; Authier, A; Buckley, TR; Dugdale, JS; Rodrigo, A; Newcomb, RD, Molecular Ecology Resources. 9 vol. (3); pp. 691-698

Recombination in feline immunodeficiency virus from feral and companion domestic cats., 6, 2008
Hayward, JJ; Rodrigo, AG, Virology Journal. 5 pp. 76

Selecting taxa to save or sequence: desirable criteria and a greedy solution., 12, 2008
Bordewich, M; Rodrigo, AG; Semple, C, Systematic Biology (OUP). 57 vol. (6); pp. 825-834

Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations., 0, 2008
Goode, M; Guindon, S; Rodrigo, A, Genome informatics. International Conference on Genome Informatics. 21 pp. 150-164

Maximum likelihood supertrees, 0, 2008
Steel, M; Rodrigo, A, Systematic Biology (OUP). 57 vol. (2); pp. 243-250

The molecular biology and evolution of feline immunodeficiency viruses of cougars, 0, 2008
Poss, M; Ross, H; Rodrigo, A; Terwee, J; VandeWoude, S; Biek, R, Veterinary Immunology and Immunopathology. 123 vol. (1-2); pp. 154-158

The perils of plenty: What are we going to do with all these genes?, 0, 2008
Rodrigo, A; Bertels, F; Heled, J; Noder, R; Shearman, H; Tsai, P, Philosophical Transactions B. 363 vol. (1512); pp. 3893-3902

Viral quasi-species evolution during hepatitis Be antigen seroconversion., 9, 2007
Lim, SG; Cheng, Y; Guindon, S; Seet, BL; Lee, LY; Hu, P; Wasser, S; Peter, FJ; Tan, T; Goode, M; Rodrigo, AG, Gastroenterology. 133 vol. (3); pp. 951-958

SQUINT: a multiple alignment program and editor., 6, 2007
Goode, MG; Rodrigo, AG, Bioinformatics. 23 vol. (12); pp. 1553-1555

Phylogenetic analysis of feline immunodeficiency virus in feral and companion domestic cats of New Zealand., 3, 2007
Hayward, JJ; Taylor, J; Rodrigo, AG, Journal of virology. 81 vol. (6); pp. 2999-3004

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes., 1, 2007
Ross, HA; Nickle, DC; Liu, Y; Heath, L; Jensen, MA; Rodrigo, AG; Mullins, JI, Evolutionary bioinformatics online. 2 pp. 53-76

Recombination in feline lentiviral genomes during experimental cross-species infection, 0, 2007
Poss, M; Idoine, A; Ross, HA; Terwee, JA; VandeWoude, S; Rodrigo, A, Virology. 359 vol. (1); pp. 146-151

Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden., 2, 2006
Ewing, G; Rodrigo, A, Evolutionary bioinformatics online. 2 pp. 227-235

Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase, 0, 2006
Poss, M; Ross, HA; Painter, SL; Holley, DC; Terwee, JA; Vandewoude, S; Rodrigo, A, Journal of virology. 80 vol. (6); pp. 2728-2737

Control of the false discovery rate applied to the detection of positively selected amino acid sites, 0, 2006
Guindon, S; Black, M; Rodrigo, A, Molecular Biology and Evolution. 23 vol. (5); pp. 919-926

Coalescent-based estimation of population parameters when the number of demes changes over time, 0, 2006
Ewing, G; Rodrigo, A, Molecular Biology and Evolution. 23 vol. (5); pp. 988-996

Erratum: Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase (Journal of Virology (2006) 80, 6 (2728-2737)), 0, 2006
Poss, M; Ross, HA; Painter, SL; Holley, DC; Terwee, JA; VandeWoude, S; Rodrigo, A, Journal of virology. 80 vol. (17); pp. 8845-

Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating subtype B envelope., 9, 2005
Doria-Rose, NA; Learn, GH; Rodrigo, AG; Nickle, DC; Li, F; Mahalanabis, M; Hensel, MT; McLaughlin, S; Edmonson, PF; Montefiori, D; Barnett, SW; Haigwood, NL; Mullins, JI, Journal of virology. 79 vol. (17); pp. 11214-11224

Evolution of relative synonymous codon usage in Human Immunodeficiency Virus type-1., 2, 2005
Meintjes, PL; Rodrigo, AG, Journal of Bioinformatics & Computational Biology. 3 vol. (1); pp. 157-168

Vector quantization of amino acids: Analysis of the HIV V3 loop region, 0, 2005
Olshen, AB; Cosman, PC; Rodrigo, AG; Bickel, PJ; Olshen, RA, Journal of Statistical Planning and Inference. 130 vol. (1-2); pp. 277-298

Integrating genealogy and epidemiology: The ancestral infection and selection graph as a model for reconstructing host virus histories, 0, 2005
Welch, D; Nicholls, GK; Rodrigo, A; Solomon, W, Theoretical Population Biology. 68 vol. (1); pp. 65-75

Pervasive genomic recombination of HIV-1 in vivo., 8, 2004
Shriner, D; Rodrigo, AG; Nickle, DC; Mullins, JI, Genetics. 167 vol. (4); pp. 1573-1583

Modeling the site-specific variation of selection patterns along lineages., 8, 2004
Guindon, S; Rodrigo, AG; Dyer, KA; Huelsenbeck, JP, Proceedings of the National Academy of Sciences of USA. 101 vol. (35); pp. 12957-12962

Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences., 5, 2004
Goode, M; Rodrigo, AG, Current Protocols in Bioinformatics. Chapter 6 pp. Unit-6.8

Applied Bioinformatics: Foreword, 0, 2004
Rodrigo, A, Applied Bioinformatics. 3 vol. (4); pp. 201-204

Immunogen sequence: The fourth tier of AIDS vaccine design, 0, 2004
Mullins, JI; Nickle, DC; Heath, L; Rodrigo, AG; Learn, GH, Expert Review of Vaccines. 3 vol. (4 SUPPL.); pp. S151-S159

Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations, 0, 2004
Ewing, G; Nicholls, G; Rodrigo, A, Genetics. 168 vol. (4); pp. 2407-2420

Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars., 9, 2003
Biek, R; Rodrigo, AG; Holley, D; Drummond, A; Anderson, CR; Ross, HA; Poss, M, Journal of virology. 77 vol. (17); pp. 9578-9589

Predicting demographic group structures based on DNA sequence data., 7, 2003
Anderson, JP; Learn, GH; Rodrigo, AG; He, X; Wang, Y; Weinstock, H; Kalish, ML; Robbins, KE; Hood, L; Mullins, JI, Molecular Biology and Evolution. 20 vol. (7); pp. 1168-1180

DNA surveillance: web-based molecular identification of whales, dolphins, and porpoises., 3, 2003
Ross, HA; Lento, GM; Dalebout, ML; Goode, M; Ewing, G; McLaren, P; Rodrigo, AG; Lavery, S; Baker, CS, Journal of Heredity. 94 vol. (2); pp. 111-114

Consensus and ancestral state HIV vaccines., 3, 2003
Nickle, DC; Jensen, MA; Gottlieb, GS; Shriner, D; Learn, GH; Rodrigo, AG; Mullins, JI, Science. 299 vol. (5612); pp. 1515-1518

Inferring evolutionary rates using serially sampled sequences from several populations., 12, 2003
Rodrigo, AG; Goode, M; Forsberg, R; Ross, HA; Drummond, A, Molecular Biology and Evolution. 20 vol. (12); pp. 2010-2018

Measurably evolving populations, 0, 2003
Drummond, AJ; Pybus, OG; Rambaut, A; Forsberg, R; Rodrigo, AG, Trends in Ecology and Evolution. 18 vol. (9); pp. 481-488

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data., 7, 2002
Drummond, AJ; Nicholls, GK; Rodrigo, AG; Solomon, W, Genetics. 161 vol. (3); pp. 1307-1320

A heteroduplex method for detection of targeted sub-populations of bacterial communities., 2, 2002
Turner, SJ; Saul, DJ; Rodrigo, AG; Lewis, GD, Fems Microbiology Letters. 208 vol. (1); pp. 9-13

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration., 11, 2002
Ross, HA; Rodrigo, AG, Journal of virology. 76 vol. (22); pp. 11715-11720

Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS., 11, 2002
Liu, S-L; Mittler, JE; Nickle, DC; Mulvania, TM; Shriner, D; Rodrigo, AG; Kosloff, B; He, X; Corey, L; Mullins, JI, Journal of virology. 76 vol. (21); pp. 10674-10684

The inference of stepwise changes in substitution rates using serial sequence samples., 7, 2001
Drummond, A; Forsberg, R; Rodrigo, AG, Molecular Biology and Evolution. 18 vol. (7); pp. 1365-1371

Substitution model of sequence evolution for the human immunodeficiency virus type 1 subtype B gp120 gene over the C2-V5 region., 7, 2001
Anderson, JP; Rodrigo, AG; Learn, GH; Wang, Y; Weinstock, H; Kalish, ML; Robbins, KE; Hood, L; Mullins, JI, Journal of Molecular Evolution. 53 vol. (1); pp. 55-62

Transition between stochastic evolution and deterministic evolution in the presence of selection: General theory and application to virology, 0, 2001
Rouzine, IM; Rodrigo, A; Coffin, JM, Microbiology and Molecular Biology Reviews. 65 vol. (1); pp. 151-185

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA., 12, 2000
Drummond, A; Rodrigo, AG, Molecular Biology and Evolution. 17 vol. (12); pp. 1807-1815

Likelihood-based tests of topologies in phylogenetics., 12, 2000
Goldman, N; Anderson, JP; Rodrigo, AG, Systematic Biology (OUP). 49 vol. (4); pp. 652-670

Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E., 11, 2000
Anderson, JP; Rodrigo, AG; Learn, GH; Madan, A; Delahunty, C; Coon, M; Girard, M; Osmanov, S; Hood, L; Mullins, JI, Journal of virology. 74 vol. (22); pp. 10752-10765

Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns, 0, 2000
Kliks, S; Contag, CH; Corliss, H; Learn, G; Rodrigo, A; Wara, D; Mullins, JI; Levy, JA, AIDS Research and Human Retroviruses. 16 vol. (13); pp. 1223-1233

Examination of Trichoderma phylogenies derived from ribosomal DNA sequence data, 0, 2000
Dodd, SL; Crowhurst, RN; Rodrigo, AG; Samuels, GJ; Hill, RA; Stewart, A, Mycological Research. 104 vol. (1); pp. 23-34

HIV evolutionary genetics., 9, 1999
Rodrigo, AG, Proceedings of the National Academy of Sciences of USA. 96 vol. (19); pp. 10559-10561

HIV-1 dynamics in children., 4, 1999
Melvin, AJ; Rodrigo, AG; Mohan, KM; Lewis, PA; Manns-Arcuino, L; Coombs, RW; Mullins, JI; Frenkel, LM, Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association. 20 vol. (5); pp. 468-473

Coalescent estimates of HIV-1 generation time in vivo., 3, 1999
Rodrigo, AG; Shpaer, EG; Delwart, EL; Iversen, AK; Gallo, MV; Brojatsch, J; Hirsch, MS; Walker, BD; Mullins, JI, Proceedings of the National Academy of Sciences of USA. 96 vol. (5); pp. 2187-2191

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection., 12, 1999
Shankarappa, R; Margolick, JB; Gange, SJ; Rodrigo, AG; Upchurch, D; Farzadegan, H; Gupta, P; Rinaldo, CR; Learn, GH; He, X; Huang, XL; Mullins, JI, Journal of virology. 73 vol. (12); pp. 10489-10502

Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles., 2, 1998
Shankarappa, R; Gupta, P; Learn, GH; Rodrigo, AG; Rinaldo, CR; Gorry, MC; Mullins, JI; Nara, PL; Ehrlich, GD, Virology. 241 vol. (2); pp. 251-259

Combinability of phylogenies and bootstrap confidence envelopes., 12, 1998
Rodrigo, AG, Systematic Biology (OUP). 47 vol. (4); pp. 727-733

Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1., 10, 1998
Poss, M; Rodrigo, AG; Gosink, JJ; Learn, GH; de Vange Panteleeff, D; Martin, HL; Bwayo, J; Kreiss, JK; Overbaugh, J, Journal of virology. 72 vol. (10); pp. 8240-8251

Genetic diversity of feline immunodeficiency virus: dual infection, recombination, and distinct evolutionary rates among envelope sequence clades., 6, 1997
Bachmann, MH; Mathiason-Dubard, C; Learn, GH; Rodrigo, AG; Sodora, DL; Mazzetti, P; Hoover, EA; Mullins, JI, Journal of virology. 71 vol. (6); pp. 4241-4253

Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays., 6, 1997
Rodrigo, AG; Goracke, PC; Rowhanian, K; Mullins, JI, AIDS Research and Human Retroviruses. 13 vol. (9); pp. 737-742

Dynamics of syncytium-inducing and non-syncytium-inducing type 1 human immunodeficiency viruses during primary infection., 11, 1997
Rodrigo, AG, AIDS Research and Human Retroviruses. 13 vol. (17); pp. 1447-1451

The effects of population bottlenecks on multilocus DNA variation in robins, 0, 1997
Ardern, SL; Lambert, DM; Rodrigo, AG; McLean, IG, Journal of Heredity. 88 vol. (3); pp. 179-186

HIV quasispecies and resampling., 7, 1996
Liu, SL; Rodrigo, AG; Shankarappa, R; Learn, GH; Hsu, L; Davidov, O; Zhao, LP; Mullins, JI, Science. 273 vol. (5274); pp. 415-416

Human immunodeficiency virus type 1 molecular evolution and the measure of selection., 12, 1996
Rodrigo, AG; Mullins, JI, AIDS Research and Human Retroviruses. 12 vol. (18); pp. 1681-1685

Covariability of V3 loop amino acids., 10, 1996
Bickel, PJ; Cosman, PC; Olshen, RA; Spector, PC; Rodrigo, AG; Mullins, JI, AIDS Research and Human Retroviruses. 12 vol. (15); pp. 1401-1411

Persistence of attenuated rev genes in a human immunodeficiency virus type 1-infected asymptomatic individual., 9, 1995
Iversen, AK; Shpaer, EG; Rodrigo, AG; Hirsch, MS; Walker, BD; Sheppard, HW; Merigan, TC; Mullins, JI, Journal of virology. 69 vol. (9); pp. 5743-5753

Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay., 4, 1995
Delwart, EL; Herring, B; Rodrigo, AG; Mullins, JI, Genome Research. 4 vol. (5); pp. S202-S216

Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: An obligately anaerobic, extremely thermophilic, cellulolytic bacterium, 0, 1994
Rainey, FA; Donnison, AM; Janssen, PH; Saul, D; Rodrigo, A; Bergquist, PL; Daniel, RM; Stackebrandt, E; Morgan, HW, Fems Microbiology Letters. 120 vol. (3); pp. 263-266

Estimating the ancestral states of a continuous-valued character using squared-change parsimony: An analytical solution, 0, 1994
Mcardle, B; Rodrigo, AG, Systematic Biology. 43 vol. (4); pp. 573-578

Inadequate support for an evolutionary link between the metazoa and the fungi, 0, 1994
Rodrigo, AG; Bergquist, PR; Bergquist, PL, Systematic Biology. 43 vol. (4); pp. 578-584

Pulsed-field gel electrophoresis of genomic digests of Thermus strains and its implications for taxonomic and evolutionary studies, 0, 1994
Rodrigo, AG; Borges, KM; Bergquist, PL, International Journal of Systematic Bacteriology. 44 vol. (3); pp. 547-552

Calibrating the bootstrap test of monophyly., 7, 1993
Rodrigo, AG, International Journal for Parasitology. 23 vol. (4); pp. 507-514

Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data., 10, 1993
Saul, DJ; Rodrigo, AG; Reeves, RA; Williams, LC; Borges, KM; Morgan, HW; Bergquist, PL, International journal of systematic bacteriology. 43 vol. (4); pp. 754-760

The effect of habitat on the helminth parasites of an island population of the Polynesian rat (Rattus exulans), 0, 1992
Roberts, M; Rodrigo, A; McArdle, B; Charleston, WAG, Journal of Zoology. 227 vol. (1); pp. 109-125

Two optimality criteria for selecting subsets of most parsimonious trees, 0, 1992
Rodrigo, AG, Systematic Biology (OUP). 41 vol. (1); pp. 33-40

A modification to Wheeler's combinatorial weights calculations, 0, 1992
Rodrigo, AG, Cladistics. 8 vol. (2); pp. 165-170

Surficial sediment-heavy metal associations in the Avon-Heathcote Estuary, New Zealand, 0, 1989
Rodrigo, AG, New Zealand Journal of Marine & Freshwater Research. 23 vol. (2); pp. 255-262

Book Chapters:

The Coalescent in The Phylogenetic Handbook, 2nd Edition, 2009
A.G. Rodrigo