Publications
Magwene, P. M., J. H. Willis, and J. K. Kelly. 2011. The statistics of bulk segregant analysis using next-generation sequencing. PLoS Computational Biology, 7(11):e1002255. [Website]
Granek, J. A., Ö. Kayıkçı, and P. M. Magwene. 2011. Pleiotropic signaling pathways orchestrate yeast development. Current Opinion in Microbiology, 14:676-681. [Website]
Lee, H. N., P. M. Magwene, and R. B. Brem. 2011. Natural genetic variation in CDC28 underlies morphological phenotypes in an environmental yeast isolate. Genetics, 188(3):723-730. [Website]
Magwene, P. M., Ö. Kayıkçı, J.A. Granek, J.M. Reininga, Z. Scholl, and D. Murray. 2011. Outcrossing, mitotic recombination, and life-history tradeoffs shape genome evolution in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences, USA, 108(5):1987-1992. [Website]
Granek, J. A. and P. M. Magwene. 2010. Environmental and genetic determinants of colony morphology in yeast. PLoS Genetics, 6(1): e1000823. [Website].
Munger, S. C. , D. L. Aylor, H. A. Syed, P. M. Magwene, D. W. Threadgill, and B. Capel. 2009. Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal. Genes and Development, 23(21):2521-2536. [Website].
Magwene, P. M. 2009. Statistical methods for studying modularity: A reply to Mitteroecker and Bookstein. Systematic Biology, 58(1):146-149. [Website].
Magwene, P. M. 2008. Using correlation proximity graphs to study phenotypic integration. Evolutionary Biology, 35(3):191-198. [Website].
Magwene, P. M. 2006. Integration and modularity in biological systems: A review. Acta Zoologica Sinica, 52(Supp. 1):490-493 [Website].
Magwene, P. M. and J. Kim. 2004. Estimating genomic co-expression networks using first-order conditional independence. Genome Biology, 5(12):R100. [Open Access Article], [PDF].
Kim, J. and P. M. Magwene. 2004. Computational challenges for integrative genomics. Genomics and Informatics, 2(1):7-18. [PDF].
Stearns, S. C. and P. M. Magwene. 2003. The naturalist in a world of genomics. American Naturalist, 161(2):171-180. [Amnat Abstract], [PDF].
Magwene, P. M., P. Lizardi, and J. Kim. 2003. Reconstructing the temporal ordering of biological samples using microarray data. Bioinformatics, 19(7):842-850. [Pubmed Abstract], [PDF].
For software and datasets see: updated-pathrecon.zip.
Magwene, P. M. 2001. New tools for studying integration and modularity. Evolution, 55(9):1734-1745. [Pubmed Abstract], [PDF].
Magwene, P. M. 2001. Comparing ontogenetic trajectories using growth process data. Systematic Biology, 50(5):640-656. [Pubmed Abstract], [PDF].
Chernoff, B. and P. M. Magwene. 1999. Morphological Integration: Forty Years Later. Pp. 319-353 in Olsen, E. C. and R. L. Miller. Morphological Integration. University of Chicago Press.
Sereno, P.C. and D.B. Dutheil, M. Iarochene, H. Larrson, G. Lyon, P. Magwene, C. Sidor, D. Varricchio, and J. Wilson. 1996. Predatory dinosaurs from the Sahara and late Cretaceous faunal differntiation. Science, 272:986-991. [Pubmed Abstract]