Fungal Genomics

• Saccharomyces Genome Database
• Candida Genome Database
• Saccharomyces Genome Resequencing Project

Genomics and Bioinformatics

• Nucleotide and Protein Sequence Resources
  • Entrez - multiple linked databases for sequence search and comparison, located at NCBI.
  • SwissProt - curated protein sequence database (US Mirror).
  • TIGR - The Institute for Genomic Research. Lot's of useful sequence databases and software tools.
  • BioCyc - pathway/genome databases.
• Computational Biology Tools
  • BLAST - the various BLAST tools from NCBI (both nucleotides and proteins)
  • Regulatory Sequence Analysis Tools - computer programs designed for the detection of regulatory control regeions in non-coding sequences.
• Graph and Network Visualization
  • Pajek - a program for visualizing large networks. Free for non-commercial use.
  • Graphviz - open source graph drawing software.
  • JGraph - an open source java library for graph visualization.

Journals

[Science], [Nature], [PNAS], [PLOS Biology], [Genetics], [Nature Genetics], [Nature Reviews Genetics],[Genome Research], [Genome Biology], [Bioinformatics], [TREE], [Evolution], [American Naturalist], [Systematic Biology], [Current Biology], [Bioessays], [BioSystems], [Annual Review of Ecology and Systematics], [Annual Review of Genetics]